PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0268.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 261aa    MW: 28447.5 Da    PI: 8.0312
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0268.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.5e-18181215135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Bostr.25993s0268.1.p 181 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 215
                           *******************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-892259IPR016679Transcription factor, GATA, plant
SMARTSM004014.8E-15175225IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.227179211IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-14179239No hitNo description
Gene3DG3DSA:3.30.50.101.5E-13179213IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.59E-13180227No hitNo description
PfamPF003207.2E-16181215IPR000679Zinc finger, GATA-type
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDMYGLSSPD LLRIDDLLDF SNEDIFSASS NSGGSTAATS SSSFPPPHNP NFHHHHLPNS  60
SSDHHSFLHD ICVPSDDAAH LEWLSQFVDD SFADFPANPL GGTMTSVKTE TSFPGKPRSK  120
RSRAPAPFAG TWSPMTPETE HQQQIHSFKL KKEQSGGGGG GGRHQSSSSE SGEGGGGMRR  180
CTHCASEKTP QWRTGPLGPK TLCNACGVRF KSGRLVPEYR PASSPTFVLT QHSNSHRKVM  240
ELRRQKEVMR QPPQVHHHPF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935900.0AB493590.1 Arabidopsis thaliana At2g45050 mRNA for hypothetical protein, partial cds, clone: RAAt2g45050.
GenBankAK3171340.0AK317134.1 Arabidopsis thaliana AT2G45050 mRNA, complete cds, clone: RAFL21-72-C19.
GenBankBT0009210.0BT000921.1 Arabidopsis thaliana clone C105099 putative GATA-type zinc finger transcription factor (At2g45050) mRNA, complete cds.
GenBankY136490.0Y13649.1 Arabidopsis thaliana mRNA for GATA transcription factor 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397685.11e-142hypothetical protein EUTSA_v10001591mg
SwissprotO497411e-139GATA2_ARATH; GATA transcription factor 2
TrEMBLV4LH941e-142V4LH94_EUTSA; Uncharacterized protein
STRINGAT2G45050.11e-136(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-114GATA transcription factor 2